PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA10g13490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 499aa    MW: 55870.1 Da    PI: 8.2014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA10g13490genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038431453123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C+++F++   L  H r+H
  CA10g13490 431 HECPFCDRVFKSGQALGGHKRSH 453
                 78******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.856390IPR007087Zinc finger, C2H2
SMARTSM003550.186385IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.83E-76485No hitNo description
PfamPF139121.1E-76587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576672.83E-7346373No hitNo description
PfamPF139128.4E-8351375IPR007087Zinc finger, C2H2
SMARTSM003557.8351373IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349351378IPR007087Zinc finger, C2H2
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
PfamPF139123.3E-10431453IPR007087Zinc finger, C2H2
SMARTSM003550.014431453IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432431453IPR007087Zinc finger, C2H2
PROSITE patternPS000280433453IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MRSHVLNNSD EFEEKLESWS ARENSHQSKF DLGGNSGYGL RENPKKTWRA VDSTSANLLP  60
QEKVCQQCGK VFQSLKALCG HMACHSEKLV LRNRLSSKTK RYKRIVVKSS NNYSLVNNNS  120
SVNVNCNGSS SVSEIDENDQ EEVAKCLMML SRDSANWNGV NSVVESSDNN SVVLETKSSS  180
TDMRLGRKDR LKCVYNQDET PGTKKREERK VKLSGNLGGE AEYESSDDSG YFLDENTIVE  240
SDISVDGFHR NGNSKWSTTR MSNAVWCDES RIDKGKGLNR TKKYPIESRK DLNDDCGFDD  300
YPIAAYMDKC EPRKRTKDSS YHPELGNKSF KKIKLGPKSP EGCKNVEKKK YECLNCKKSF  360
NSFQALGGHR PCHKKANAYL ESLNGTGESS LDADCDDKHR ETSSSKKTAS AAKDLSYSPE  420
KKIKLKKSKG HECPFCDRVF KSGQALGGHK RSHFIVGTEQ NMNRSSAVKK EVDDLLDLNL  480
PAPVDDEDDD EHAHLVSW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211KREERKVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016546658.10.0PREDICTED: uncharacterized protein LOC107846898
TrEMBLM1CQY50.0M1CQY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000727960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-37C2H2-like zinc finger protein